PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0206.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 265aa    MW: 29971.1 Da    PI: 8.21
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-1575127155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +r++h+ +Er+RR++  s f +Lr llP+      ++K s ++ +e+Av+YIk+Lq
  Bostr.13671s0206.1.p  75 KRANHKDIERQRRQEATSLFKNLRNLLPSqY---IKGKRSSSDHVEEAVNYIKDLQ 127
                           79***************************66...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-1172131No hitNo description
SuperFamilySSF474598.24E-1572146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.91674126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1275127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1175145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDFADSSLFT PDFAYENDFD FSSLITPSTL ISFQEPNPCN PIIHCAGIQN DGRQKVCETT  60
ITSEIRKGDD VPKNKRANHK DIERQRRQEA TSLFKNLRNL LPSQYIKGKR SSSDHVEEAV  120
NYIKDLQKKI KEISEKRDRI KRTITHRSST SKCSKRSLAS STSSPSSTCS CVGDTHMAVV  180
VRPCLIGLEI VVSCCFRHES FLSSVLQLLA QEQCLNVVSC ISTRLPQRFT HTIVSEVEEG  240
IEIYFSEIHE KLMKMGRSSY AYLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KRANHKDIERQRR
2126141QKKIKEISEKRDRIKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254164e-94AC025416.4 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence.
GenBankAC0254174e-94AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankCP0026844e-94CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480445.11e-162PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-143BH055_ARATH; Transcription factor bHLH55
TrEMBLR0I2Y41e-145R0I2Y4_9BRAS; Uncharacterized protein
STRINGAT1G12540.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-133bHLH family protein